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1

Classification schemes for protein structure and function

Ouzounis, Christos A., Coulson, Richard M. R., Enright, Anton J., Kunin, Victor, Pereira-Leal, José B.

Journal:

Nature Reviews Genetics

Year:

2003

Language:

english

File:

PDF, 1.28 MB

english, 2003

2

Caenorhabditis elegans

McLysaght, Aoife, Enright, Anton J., Skrabanek, Lucy, Wolfe, Kenneth H.

Journal:

Year:

2000

Language:

english

File:

PDF, 170 KB

english, 2000

3

10.1038/47056

Ouzounis, Christos A., Enright, Anton J., Iliopoulos, Ioannis, Kyrpides, Nikos C.

Journal:

Year:

1999

Language:

english

File:

PDF, 250 KB

english, 1999

4

The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements

De Fazio, Serena, Bartonicek, Nenad, Di Giacomo, Monica, Abreu-Goodger, Cei, Sankar, Aditya, Funaya, Charlotta, Antony, Claude, Moreira, Pedro N., Enright, Anton J., O’Carroll, Dónal

Journal:

Year:

2011

Language:

english

File:

PDF, 2.61 MB

english, 2011

5

Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future

Pavlopoulos, Georgios A., Malliarakis, Dimitris, Papanikolaou, Nikolas, Theodosiou, Theodosis, Enright, Anton J., Iliopoulos, Ioannis

Journal:

Year:

2015

Language:

english

File:

PDF, 3.57 MB

english, 2015

6

Estimation of Synteny Conservation and Genome Compaction Between Pufferfish (Fugu) and Human

McLysaght, Aoife, Enright, Anton J., Skrabanek, Lucy, Wolfe, Kenneth H.

Journal:

Year:

2000

Language:

english

File:

PDF, 182 KB

english, 2000

7

Nematode Functional Genomics

McLysaght, Aoife, Enright, Anton J., Skrabanek, Lucy, Wolfe, Kenneth H.

Journal:

Year:

2000

Language:

english

File:

PDF, 95 KB

english, 2000

8

Plant and Animal Genome VIII and Agricultural Microbes Genome I

McLysaght, Aoife, Enright, Anton J., Skrabanek, Lucy, Wolfe, Kenneth H.

Journal:

Year:

2000

Language:

english

File:

PDF, 193 KB

english, 2000

9

The Kyoto Encyclopedia of Genes and Genomes—KEGG

McLysaght, Aoife, Enright, Anton J., Skrabanek, Lucy, Wolfe, Kenneth H.

Journal:

Year:

2000

Language:

english

File:

PDF, 2.60 MB

english, 2000

10

Mapping functional associations in the entire genome of Drosophila melanogaster using fusion analysis

Ioannis Iliopoulos, Anton J. Enright, Patrick Poullet, Christos A. Ouzounis

Journal:

Comparative and Functional Genomics

Year:

2003

Language:

english

File:

PDF, 122 KB

english, 2003

11

Evolutionary and functional insights intoLeishmaniaMETA1: evidence for lateral gene transfer and a role for META1 in secretion

Vidhi Puri, Aneesh Goyal, Rajan Sankaranarayanan, Anton J Enright, Tushar Vaidya

Journal:

BMC Evolutionary Biology

Year:

2011

Language:

english

File:

PDF, 926 KB

english, 2011

12

Detection of functional modules from protein interaction networks

Jose B. Pereira-Leal, Anton J. Enright, Christos A. Ouzounis

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 1.51 MB

english, 2004

13

Computational Prediction of Protein–Protein Interactions

Lucy Skrabanek, Harpreet K. Saini, Gary D. Bader, Anton J. Enright

Journal:

Molecular Biotechnology

Year:

2008

Language:

english

File:

PDF, 1.43 MB

english, 2008

14

Detecting microRNA binding and siRNA off-target effects from expression data

Abreu-Goodger, Cei, van Dongen, Stijn, Enright, Anton J

Journal:

Year:

2008

Language:

english

File:

PDF, 1024 KB

english, 2008

15

Network visualization and analysis of gene expression data using BioLayout Express3D

Theocharidis, Athanasios, van Dongen, Stjin, Enright, Anton J, Freeman, Tom C

Journal:

Nature Protocols

Year:

2009

Language:

english

File:

PDF, 1.19 MB

english, 2009

16

Prediction of microRNA targets

Pierre Mazière, Anton J. Enright

Journal:

Drug Discovery Today

Year:

2007

Language:

english

File:

PDF, 378 KB

english, 2007

17

Messenger RNA and microRNA profiling during early mouse EB formation

Rashmi Tripathi, Harpreet Kaur Saini, Roland Rad, Cei Abreu-Goodger, Stijn van Dongen, Anton J. Enright

Journal:

Gene Expression Patterns

Year:

2011

Language:

english

File:

PDF, 872 KB

english, 2011

18

MapMi: automated mapping of microRNA loci

José Afonso Guerra-Assunção, Anton J Enright

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 955 KB

english, 2010

19

Reciprocal regulation of microRNA and mRNA profiles in neuronal development and synapse formation

Sergei A Manakov, Seth GN Grant, Anton J Enright

Journal:

Year:

2009

Language:

english

File:

PDF, 1.06 MB

english, 2009

20

Systematic analysis of off-target effects in an RNAi screen reveals microRNAs affecting sensitivity to TRAIL-induced apoptosis

Ian Sudbery, Anton J Enright, Andrew G Fraser, Ian Dunham

Journal:

Year:

2010

Language:

english

File:

PDF, 374 KB

english, 2010

21

Denoising inferred functional association networks obtained by gene fusion analysis

Atanas Kamburov, Leon Goldovsky, Shiri Freilich, Aliki Kapazoglou, Victor Kunin, Anton J Enright, Athanasios Tsaftaris, Christos A Ouzounis

Journal:

Year:

2007

Language:

english

File:

PDF, 846 KB

english, 2007

22

Annotation of mammalian primary microRNAs

Harpreet K Saini, Anton J Enright, Sam Griffiths-Jones

Journal:

Year:

2008

Language:

english

File:

PDF, 930 KB

english, 2008

23

A logic-based diagram of signalling pathways central to macrophage activation

Sobia Raza, Kevin A Robertson, Paul A Lacaze, David Page, Anton J Enright, Peter Ghazal, Tom C Freeman

Journal:

BMC Systems Biology

Year:

2008

Language:

english

File:

PDF, 2.10 MB

english, 2008

24

Large-scale analysis of microRNA evolution

Guerra-Assunção, José, Enright, Anton J

Journal:

Year:

2012

Language:

english

File:

PDF, 1.12 MB

english, 2012

25

The two most common histological subtypes of malignant germ cell tumour are distinguished by global microRNA profiles, associated with differential transcription factor expression

Matthew J Murray, Harpreet K Saini, Stijn van Dongen, Roger D Palmer, Balaji Muralidhar, Mark R Pett, Matias Piipari, Claire M Thornton, James C Nicholson, Anton J Enright, Nicholas Coleman

Journal:

Molecular Cancer

Year:

2010

Language:

english

File:

PDF, 1.80 MB

english, 2010

26

MicroRNA targets inDrosophila

Anton J Enright, Bino John, Ulrike Gaul, Thomas Tuschl, Chris Sander, Debora S Marks

Journal:

Year:

2003

Language:

english

File:

PDF, 516 KB

english, 2003

27

Multiple Epigenetic Mechanisms and the piRNA Pathway Enforce LINE1 Silencing during Adult Spermatogenesis

Di Giacomo, Monica, Comazzetto, Stefano, Saini, Harpreet, De Fazio, Serena, Carrieri, Claudia, Morgan, Marcos, Vasiliauskaite, Lina, Benes, Vladimir, Enright, Anton J., O’Carroll, Dónal

Journal:

Year:

2013

Language:

english

File:

PDF, 2.16 MB

english, 2013

28

Correction: Human MicroRNA Targets

John, Bino, Enright, Anton J., Aravin, Alexei, Tuschl, Thomas, Sander, Chris, Marks, Debora S.

Journal:

Year:

2005

Language:

english

File:

PDF, 29 KB

english, 2005

29

RNA editing of human microRNAs

Matthew J Blow, Russell J Grocock, Stijn van Dongen, Anton J Enright…

Journal:

Year:

2006

Language:

english

File:

PDF, 486 KB

english, 2006

30

Myriads of protein families, and still counting

Victor Kunin, Ildefonso Cases, Anton J Enright, Victor de Lorenzo…

Journal:

Year:

2003

Language:

english

File:

PDF, 197 KB

english, 2003

31

Functional associations of proteins in entire genomes by means of exhaustive detection of gene fusions

Anton J Enright, Christos A Ouzounis

Journal:

Year:

2001

Language:

english

File:

PDF, 135 KB

english, 2001

32

BioLayoutJava

Leon Goldovsky, Ildefonso Cases, Anton J. Enright…

Journal:

Applied Bioinformatics

Year:

2005

Language:

english

File:

PDF, 286 KB

english, 2005

33

Kraken: A set of tools for quality control and analysis of high-throughput sequence data

Davis, Matthew P.A., van Dongen, Stijn, Abreu-Goodger, Cei, Bartonicek, Nenad, Enright, Anton J.

Journal:

Year:

2013

Language:

english

File:

PDF, 738 KB

english, 2013

34

Integrated analysis of microRNA and mRNA expression and association with HIF binding reveals the complexity of microRNA expression regulation under hypoxia

Camps, Carme, Saini, Harpreet K, Mole, David R, Choudhry, Hani, Reczko, Martin, Guerra-Assunção, José, Tian, Ya-Min, Buffa, Francesca M, Harris, Adrian L, Hatzigeorgiou, Artemis G, Enright, Anton J, R

Journal:

Molecular Cancer

Year:

2014

Language:

english

File:

PDF, 1020 KB

english, 2014

35

Deciphering the role of micrornas in early stages of haematopoiesis

Malouf, Camille, Bartonicek, Nenad, Bacon, Wendi, Kapeni, Chrysa, Enright, Anton, Ottersbach, Katrin

Journal:

Experimental Hematology

Year:

2013

Language:

english

File:

PDF, 44 KB

english, 2013

36

Depletion of HPV16 early genes induces autophagy and senescence in a cervical carcinogenesis model, regardless of viral physical state

Hanning, Jennifer E, Saini, Harpreet K, Murray, Matthew J, Caffarel, Maria M, van Dongen, Stijn, Ward, Dawn, Barker, Emily M, Scarpini, Cinzia G, Groves, Ian J, Stanley, Margaret A, Enright, Anton J,

Journal:

The Journal of Pathology

Year:

2013

Language:

english

File:

PDF, 1.60 MB

english, 2013

37

MiR-25 Regulates Wwp2 and Fbxw7 and Promotes Reprogramming of Mouse Fibroblast Cells to iPSCs

Lu, Dong, Davis, Matthew P. A., Abreu-Goodger, Cei, Wang, Wei, Campos, Lia S., Siede, Julia, Vigorito, Elena, Skarnes, William C., Dunham, Ian, Enright, Anton J., Liu, Pentao, Panepucci, Rodrigo Alexa

Journal:

Year:

2012

Language:

english

File:

PDF, 852 KB

english, 2012

38

Detecting and Comparing Non-Coding RNAs in the High-Throughput Era

Bussotti, Giovanni, Notredame, Cedric, Enright, Anton

Journal:

International Journal of Molecular Sciences

Year:

2013

Language:

english

File:

PDF, 370 KB

english, 2013

39

Human MicroRNA Targets

John, Bino, Enright, Anton J., Aravin, Alexei, Tuschl, Thomas, Sander, Chris, Marks, Debora S.

Journal:

Year:

2004

Language:

english

File:

PDF, 42 KB

english, 2004

40

Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data

Freeman, Tom C., Goldovsky, Leon, Brosch, Markus, van Dongen, Stijn, Mazière, Pierre, Grocock, Russell J., Freilich, Shiri, Thornton, Janet, Enright, Anton J.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.23 MB

english, 2007

41

Improved definition of the mouse transcriptome via targeted RNA sequencing

Bussotti, Giovanni, Leonardi, Tommaso, Clark, Michael B., Mercer, Tim R., Crawford, Joanna, Malquori, Lorenzo, Notredame, Cedric, Dinger, Marcel E., Mattick, John S., Enright, Anton J.

Journal:

Genome Research

Year:

2016

Language:

english

File:

PDF, 543 KB

english, 2016

42

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences

Furió-Tarí, Pedro, Tarazona, Sonia, Gabaldón, Toni, Enright, Anton J., Conesa, Ana

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 1.13 MB

english, 2016

43

High-density P300 enhancers control cell state transitions

Witte, Steven, Bradley, Allan, Enright, Anton J., Muljo, Stefan A.

Journal:

Year:

2015

Language:

english

File:

PDF, 3.27 MB

english, 2015

44

Activation of the TGFβ pathway impairs endothelial to haematopoietic transition

Vargel, Özge, Zhang, Yang, Kosim, Kinga, Ganter, Kerstin, Foehr, Sophia, Mardenborough, Yannicka, Shvartsman, Maya, Enright, Anton J., Krijgsveld, Jeroen, Lancrin, Christophe

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 2.32 MB

english, 2016

45

Exploring regulatory networks of miR-96 in the developing inner ear

Lewis, Morag A., Buniello, Annalisa, Hilton, Jennifer M., Zhu, Fei, Zhang, William I., Evans, Stephanie, van Dongen, Stijn, Enright, Anton J., Steel, Karen P.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.11 MB

english, 2016

46

3′uridylation controls mature microRNA turnover during CD4 T cell activation

Gutierrez-Vazquez, Cristina, Enright, Anton J, Rodríguez-Galán, Ana, Perez-García, Arantxa, Collier, Paul, Jones, Matthew R, Benes, Vladimir, Mizgerd, Joseph P, Mittelbrunn, María, Ramiro, Almudena R,

Journal:

Year:

2017

Language:

english

File:

PDF, 2.16 MB

english, 2017

47

A MILI-independent piRNA biogenesis pathway empowers partial germline reprogramming

Vasiliauskaitė, Lina, Vitsios, Dimitrios, Berrens, Rebecca V, Carrieri, Claudia, Reik, Wolf, Enright, Anton J, O'Carroll, Dónal

Journal:

Nature Structural and Molecular Biology

Year:

2017

Language:

english

File:

PDF, 1.62 MB

english, 2017

48

MicroRNA Targets inDrosophila

Anton Enright,Bino John,Ulrike Gaul,Thomas Tuschl,Chris Sander…

Journal:

Year:

2003

Language:

english

File:

PDF, 1.86 MB

english, 2003

49

mRNA 3′ uridylation and poly(A) tail length sculpt the mammalian maternal transcriptome

Morgan, Marcos, Much, Christian, DiGiacomo, Monica, Azzi, Chiara, Ivanova, Ivayla, Vitsios, Dimitrios M., Pistolic, Jelena, Collier, Paul, Moreira, Pedro N., Benes, Vladimir, Enright, Anton J., O’Carr

Journal:

Year:

2017

Language:

english

File:

PDF, 7.80 MB

english, 2017

50

The RNA m 6 A Reader YTHDF2 Is Essential for the Post-transcriptional Regulation of the Maternal Transcriptome and Oocyte Competence

Ivanova, Ivayla, Much, Christian, Di Giacomo, Monica, Azzi, Chiara, Morgan, Marcos, Moreira, Pedro N., Monahan, Jack, Carrieri, Claudia, Enright, Anton J., O’Carroll, Dónal

Journal:

Year:

2017

Language:

english

File:

PDF, 4.12 MB

english, 2017